Bioinformatics Analyst Job at BEPC Inc. - Business Excellence Professional Consulting, South San Francisco, CA

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  • BEPC Inc. - Business Excellence Professional Consulting
  • South San Francisco, CA

Job Description

Job Title: Bioinformatics Analyst

Location: South San Francisco, CA 94080

  • Hybrid (South San Francisco, CA) or Remote (Pacific Time Zone or US-friendly time zone)

Employment Type: W2 Contract, 6 Month Contract with possibility for extensions

Pay Rate: $50.00 – $54.95 per hour

Work Schedule: Monday – Friday

Role Overview:

BEPC is seeking a Bioinformatics Analyst to support our client’s genomics initiatives focused on increasing diversity in genetic datasets. This role involves developing and maintaining analytical pipelines for long-read sequencing data, including methylation and whole-genome sequencing (WGS).

The ideal candidate will have hands-on experience with NGS pipelines, strong programming skills, and the ability to collaborate across global teams in a dynamic research environment.

Key Responsibilities:

  • Develop and maintain bioinformatics pipelines for long-read sequencing (Oxford Nanopore) and methylation data.
  • Execute workflows for data ingestion, processing, and interpretation .
  • Perform quality control (QC) at multiple stages and identify data anomalies.
  • Conduct variant calling and methylation analysis .
  • Maintain clear documentation of pipelines, QC metrics, and code using Git.
  • Collaborate with global teams to ensure smooth data transfer and reporting .
  • Serve as a technical point of contact for data operations and workflow execution .

Qualifications:

  • Bachelor’s or Master’s degree in Bioinformatics, Computational Biology, or related field.
  • 2+ years of hands-on bioinformatics experience .
  • Proficiency in Python and shell scripting (Bash) .
  • Experience with HPC or cloud platforms (AWS) .
  • Strong experience with NGS pipelines (Nextflow, Snakemake, or similar).
  • Hands-on experience with human WGS data , especially Oxford Nanopore (ONT) .
  • Experience with variant calling, basecalling, or methylation analysis .
  • Familiarity with Git for version control and documentation .

Preferred Qualifications:

  • Knowledge of T2T reference standards or pangenome graphs .
  • Experience working in collaborative, global research environments .
  • Strong communication skills and ability to work across multiple time zones .

Job Tags

Hourly pay, Contract work, Remote work, Monday to Friday

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